Welcome to DivBrowse’s documentation!

Contents:

• Introduction
  • What is DivBrowse?
• Installation
  • Installation via pip
  • Installation via Docker or Podman
  • Installation from sources on Github via conda
• Usage
  • Manual conversion of VCF file to Zarr format
  • DivBrowse CLI reference
• Javascript API
  • Control the displayed samples
  • Control the displayed samples and change displayed labels of the samples
  • Control the displayed samples and provided a link as label
  • Getting back IDs of samples that have been selected in a scatterplot
• Tutorial - How to setup a DivBrowse instance for your data
  • Setup a directory structure for the new instance
  • Obtaining VCF files from the European Nucleotide Archive
  • Obtaining the gene annotation from ensemble.org
  • Setup configuration file
  • Start intergrated web server to serve the instance
• Configuration
• API Reference

Indices and tables

• Index

• Search Page